Class | Description |
---|---|
Biomolecule |
The superclass for all biological molecules that contain sequence information.
|
BiomoleculeGroup | |
BiomoleculeGroupList |
This Class stores a sorted set of related biomolecule groups obtained from comparison (i.e. the BiomleculeGroupList represents
either an intersection or the set differences)
|
BiomoleculeList | |
BiomoleculePair |
This class encapsulates a set of two biomolecules that pass the test for identity along with the utilized comaparison method, the score
obtained from a sequence based comparison and a string representation of the comparison result in case of a sequence based comparison
(i.e. the aligned strings and an identification of the aligned positions and the existing gaps etc.)
|
CleavageSite |
Represents a cleavage site of an enzyme.
|
Digest |
This class represents an enzymatic digest.
|
Enzyme |
Represents basic features of an enzyme used for digestion of a protein.
|
Gene |
Representation of a Gene.
|
Peptide |
Representation of a peptide, usually created by means of protein digestion.
|
Probe |
A Probe instance is the representation of a small DNA reporter molecule that is used to measure expression levels of related transcripts and
subsequently genes by use of DNA microarray experiments.
|
Protein |
Representation of a protein.
|
Sample | |
Transcript |
Representation of a Transcript (i.e. the processed messenger mRNA that arise from the precursor mRNA).
|