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writeBGIdentifier(BiomoleculeGroup, String, String) - Static method in class de.mpc.prolic.misc.IO
Auxiliary method used to write information concerning the identifier of the biomolecule group
writeBMIdentifier(Biomolecule, String, String) - Static method in class de.mpc.prolic.misc.IO
Auxiliary method used to write the identifier of the biomolecule
writeBMOrigin(Biomolecule, String, String) - Static method in class de.mpc.prolic.misc.IO
Auxiliary method used to write the origin of the biomolecule (i.e. the list where the biomolecule originate from)
writeBMSequence(Biomolecule, String, String) - Static method in class de.mpc.prolic.misc.IO
Auxiliary method used to write the sequence of the biomolecule (either amino acid or nucleotide sequences)
writeGeneName(Biomolecule, String, String, String) - Static method in class de.mpc.prolic.misc.IO
Auxiliary method used to ensure correct output format of the ProLiC result file even in case of wrong user settings, i.e. enabling writing of gene name information in case of missing availability of such information.
writePeptideInformations(Biomolecule, String, String, String) - Static method in class de.mpc.prolic.misc.IO
Auxiliary method used to ensure correct output format of the ProLiC result file even in case of wrong user settings, i.e. enabling writing of peptide information in case of missing availability of such information.
writeProteinName(Biomolecule, String, String, String) - Static method in class de.mpc.prolic.misc.IO
Auxiliary method used to ensure correct output format of the ProLiC result file even in case of wrong user settings, i.e. enabling writing of protein name information in case of missing information.
writeRepresentative(Biomolecule, String, String) - Static method in class de.mpc.prolic.misc.IO
Auxiliary method used to write group representative information
writeResults(TreeSet<BiomoleculeGroupList>, String, String, String, String, boolean, boolean, boolean, int, Logger, Boolean, String) - Static method in class de.mpc.prolic.misc.IO
Writing the results of the comparison to a file.
WrongProLiCSettingException - Exception in de.mpc.prolic.exceptions
Exception, which deals with wrong settings given in the configuration file.
WrongProLiCSettingException() - Constructor for exception de.mpc.prolic.exceptions.WrongProLiCSettingException
 
WrongProLiCSettingException(String) - Constructor for exception de.mpc.prolic.exceptions.WrongProLiCSettingException
 
WrongProLiCSettingException(Throwable) - Constructor for exception de.mpc.prolic.exceptions.WrongProLiCSettingException
 
WrongProLiCSettingException(String, Throwable) - Constructor for exception de.mpc.prolic.exceptions.WrongProLiCSettingException
 
WrongProLiCSettingException(String, Throwable, boolean, boolean) - Constructor for exception de.mpc.prolic.exceptions.WrongProLiCSettingException
 
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